PD Dr. rer. nat. Amir Madany Mamlouk

Privatdozent

Institut für Neuro- und Bioinformatik
Ratzeburger Allee 160 (Geb. 64)
23562 Lübeck

Email:
Phone:
+49 451 3101 5502
Fax:
+49 451 3101 5504

Forschungsinteressen

  • Big Data in Medizin und Biowissenschaften
  • Das Verhalten von adulten Stammzellen (in vitro)
  • Wie funktioniert Wahrnehmung (am Beispiel des Riechens)
  • Modellierung von komplexen Gehirnzuständen in rs-fMRI
  • Lernen und Lehren messbar machen

 

Kurzlebenslauf

 

 Lehre   Links  

 

Publikationen

2015

  • Norman Scheel and Andrea Esswanger and Thomas F. Münte and Marcus Heldmann and Ulrike M. Krämer and Amir Madany Mamlouk: Selection of Seeds for Resting-State fMRI-Based Prediction of Individual Brain Maturity. Bildverarbeitung für die Medizin, Informatik aktuell, pp. 371-376, 2015
    BibTeX
    @article{ScEsMuHeKrMa15,
    author = {Norman Scheel and Andrea Esswanger and Thomas F. M{\"u}nte and Marcus Heldmann and Ulrike M. Kr{\"a}mer and Amir Madany Mamlouk},
    title = {Selection of {S}eeds for {R}esting-{S}tate f{MRI}-{B}ased {P}rediction of {I}ndividual {B}rain {M}aturity},
    journal = {Bildverarbeitung f{\"u}r die {M}edizin, Informatik aktuell},
    pages = {371--376},
    year = {2015},
    }
    
    

2014

  • Tim Becker and Winnie Kanje and Daniel Rapoport and Konstantin Thierbach and Nico Scherf and Ingo Roeder and Amir Madany Mamlouk: The Benchmark Data Set CeTres.b-Mi for in vitro Mitosis Detection. in IEEE International Symposium on Biomedical Imaging (ISBI`14), pp. 469-472, 2014
    BibTeX
    @inproceedings{BeKaRaThScRoMa14,
    author = {Tim Becker and Winnie Kanje and Daniel Rapoport and Konstantin Thierbach and Nico Scherf and Ingo Roeder and Amir Madany Mamlouk},
    title = {{T}he {B}enchmark {D}ata {S}et {C}e{T}res.b-{M}i for in vitro {M}itosis {D}etection},
    booktitle = {IEEE International Symposium on Biomedical Imaging (ISBI'14)},
    pages = {469--472},
    year = {2014},
    }
    
    
  • Norman Scheel and Catie Chang and Amir Madany Mamlouk: The importance of physiological noise regression in high temporal resolution fMRI. in Artificial Neural Networks - ICANN 2014, pp. 540-547, Springer, 2014
    BibTeX
    @inproceedings{ScChMa14,
    author = {Norman Scheel and Catie Chang and Amir Madany Mamlouk},
    title = {{T}he importance of physiological noise regression in high temporal resolution f{MRI}},
    booktitle = {Artificial Neural Networks - ICANN 2014},
    pages = {540--547},
    publisher = {Springer},
    series = {Lecture Notes in Computer Science (LNCS) 8681:540--547},
    year = {2014},
    }
    
    

2012

  • Henry Schütze and Thomas Martinetz and Silke Anders and Amir Madany Mamlouk: A Multivariate Approach to Estimate Complexity of FMRI Time Series. in Artificial Neural Networks and Machine Learning - ICANN 2012, 22nd International Conference, Lausanne, Switzerland, September 11-14, 2012, Proceedings, Part II, no. 7553, pp. 540-547, Springer, 2012
    BibTeX
    @inproceedings{ScMaAnMa12,
    author = {Henry Sch{\"u}tze and Thomas Martinetz and Silke Anders and Amir Madany Mamlouk},
    title = {A {M}ultivariate {A}pproach to {E}stimate {C}omplexity of {F}{MRI} {T}ime {S}eries},
    editor = {Alessandro E.P. Villa and W{\l}odzis{\l}aw Duch and P{\'{e}}ter {\'{E}}rdi and Francesco Masulli and G{\"u}nter Palm},
    booktitle = {Artificial Neural Networks and Machine Learning - ICANN 2012, 22nd International Conference, Lausanne, Switzerland, September 11-14, 2012, Proceedings, Part II},
    year = {2012},
    pages = {540--547},
    publisher = {Springer},
    series = {Lecture Notes in Computer Science},
    volume = {7553},
    pdf = {http://www.inb.uni-luebeck.de/publications/pdfs/ScMaAnMa12.pdf},
    }
    
    
  • Becker, Tim and Rapoport, Daniel and Madany Mamlouk, Amir: From timelapse-data to genealogic trees: Using different contrast mechanisms to improve cell tracking. in IEEE International Symposium on Biomedical Imaging (ISBI`12), pp. 386-389, 2012
    BibTeX
    @inproceedings{BeRaMa12,
    author = {Becker, Tim and Rapoport, Daniel and Madany Mamlouk, Amir},
    title = {From timelapse-data to genealogic trees: Using different contrast mechanisms to improve cell tracking},
    booktitle = {IEEE International Symposium on Biomedical Imaging (ISBI'12)},
    pages = {386--389},
    year = {2012},
    }
    
    

2011

  • Rapoport, Daniel H. and Becker, Tim and Madany Mamlouk, Amir and Schicktanz, Simone and Kruse, Charli: A Novel Validation Algorithm Allows for Automated Cell Tracking and the Extraction of Biologically Meaningful Parameters. PLoS ONE, no. 6, pp. e27315, 2011
    BibTeX Link
    @article{RaBeMaScKr11,
    author = {Rapoport, Daniel H. and Becker, Tim and Madany Mamlouk, Amir and Schicktanz, Simone and Kruse, Charli},
    title = {A {N}ovel {V}alidation {A}lgorithm {A}llows for {A}utomated {C}ell {T}racking and the {E}xtraction of {B}iologically {M}eaningful {P}arameters},
    journal = {PLoS ONE},
    volume = {6},
    number = {11},
    pages = {e27315},
    year = {2011},
    doi = {doi:10.1371/journal.pone.0027315},
    }
    
    
  • Becker, Tim and Rapoport, Daniel and Madany Mamlouk, Amir: Adaptive mitosis detection in large in vitro stem cell populations using timelapse microscopy. in Bildverarbeitung für die Medizin (BVM 2011), pp. 49-53, 2011
    BibTeX
    @inproceedings{BeRaMa11,
    author = {Becker, Tim and Rapoport, Daniel and Madany Mamlouk, Amir},
    title = {Adaptive mitosis detection in large in vitro stem cell populations using timelapse microscopy},
    booktitle = {Bildverarbeitung f{\"u}r die Medizin (BVM 2011)},
    pages = {49--53},
    year = {2011},
    series = {Informatik aktuell},
    }
    
    
  • Jiajie Zhang and Amir Madany Mamlouk and Thomas Martinetz and Suhua Chang and Jing Wang and Rolf Hilgenfeld: PhyloMap: an algorithm for visualizing relationships of large sequence data sets and its application to the influenza A virus genome. BMC Bioinformatics, no. 12, pp. 248, 2011
    BibTeX Link
    @article{ZhMaMaChWaHi11,
    author = {Jiajie Zhang and Amir Madany Mamlouk and Thomas Martinetz and Suhua Chang and Jing Wang and Rolf Hilgenfeld},
    title = {{P}hylo{M}ap: an algorithm for visualizing relationships of large sequence data sets and its application to the influenza {A} virus genome},
    journal = {BMC Bioinformatics},
    year = {2011},
    volume = {12},
    pages = {248},
    url = {http://www.ncbi.nlm.nih.gov/pubmed/21689434},
    pdf = {http://www.inb.uni-luebeck.de/publications/pdfs/ZhMaMaChWaHi11.pdf},
    }
    
    
  • Ingrid Braenne and Jeanette Erdmann and Amir Madany Mamlouk: SNPboost: Interaction Analysis and Risk Prediction on GWA Data. in Artificial Neural Networks - ICANN 2011, 21th International Conference, Espoo, Finland, June 14-17th, 2011, Proceedings, no. 6792, pp. 111-118, Springer, 2011
    BibTeX
    @inproceedings{BrErMa11,
    author = {Ingrid Br{\ae}nne and Jeanette Erdmann and Amir Madany Mamlouk},
    title = {{SNP}boost: {I}nteraction {A}nalysis and {R}isk {P}rediction on {GWA} {D}ata},
    booktitle = {Artificial Neural Networks - ICANN 2011, 21th International Conference, Espoo, Finland, June 14-17th, 2011, Proceedings},
    publisher = {Springer},
    volume = {6792},
    series = {Lecture Notes in Computer Science},
    pages = {111--118},
    year = {2011},
    pdf = {http://www.inb.uni-luebeck.de/publications/pdfs/BrErMa11.pdf},
    }
    
    

2010

  • Ingrid Braenne and Kai Labusch and Thomas Martinetz and Amir Madany Mamlouk: Interpretive Risk Assessment on GWA Data with Sparse Linear Regression. Machine Learning Reports, pp. 61-68, 2010
    BibTeX
    @article{BrLaMaMa10,
    author = {Ingrid Br{\ae}nne and Kai Labusch and Thomas Martinetz and Amir Madany Mamlouk},
    title = {Interpretive {R}isk {A}ssessment on {GWA} {D}ata with {S}parse {L}inear {R}egression},
    journal = {Machine Learning Reports},
    pages = {61--68},
    year = {2010},
    pdf = {http://www.inb.uni-luebeck.de/publications/pdfs/BrLaMaMa10.pdf},
    }
    
    
  • Ingrid Braenne and Kai Labusch and Amir Madany Mamlouk: Sparse Coding for Feature Selection on Genome-wide Association Data. in Artificial Neural Networks - ICANN 2010, 20th International Conference, Thessaloniki,Greece, September 15-18, 2010, Proceedings, no. 6352, pp. 337-346, Springer, 2010
    BibTeX
    @inproceedings{BrLaMa10,
    author = {Ingrid Br{\ae}nne and Kai Labusch and Amir Madany Mamlouk},
    title = {{S}parse {C}oding for {F}eature {S}election on {G}enome-wide {A}ssociation {D}ata},
    booktitle = {Artificial Neural Networks - ICANN 2010, 20th International Conference, Thessaloniki,Greece, September 15-18, 2010, Proceedings},
    publisher = {Springer},
    volume = {6352},
    series = {Lecture Notes in Computer Science},
    pages = {337--346},
    year = {2010},
    pdf = {http://www.inb.uni-luebeck.de/publications/pdfs/BrLaMa10.pdf},
    }
    
    

2009

  • Madany Mamlouk, Amir: Computergestützte Analyse von biologischen Wahrnehmungsprozessen. GI-Edition - Lecture Notes in Informatics (LNI), pp. 171-180, 2009
    BibTeX
    @article{Mada09,
    author = {Madany Mamlouk, Amir},
    title = {Computergest{\"u}tzte {A}nalyse von biologischen {W}ahrnehmungsprozessen},
    journal = {GI-Edition - Lecture Notes in Informatics (LNI)},
    pages = {171--180},
    year = {2009},
    pdf = {http://www.inb.uni-luebeck.de/publications/pdfs/Mada09.pdf},
    }
    
    

2008

  • Klement, Sascha and Madany Mamlouk, Amir and Martinetz, Thomas: Reliability of Cross-Validation for SVMs in High-Dimensional, Low Sample Size Scenarios. in Artificial Neural Networks - ICANN 2008, 18th International Conference, Prague, Czech Republic, September 3-6, 2008, Proceedings, Part II, no. 5163, pp. 41-50, Springer, 2008
    BibTeX
    @inproceedings{KlMaMa08,
    author = {Klement, Sascha and Madany Mamlouk, Amir and Martinetz, Thomas},
    title = {{R}eliability of {C}ross-{V}alidation for {SVM}s in {H}igh-{D}imensional, {L}ow {S}ample {S}ize {S}cenarios},
    pages = {41--50},
    editor = {Vera Kurkov{\'a} and Roman Neruda and Jan Koutn\'{\i}k},
    booktitle = {Artificial Neural Networks - ICANN 2008, 18th International Conference, Prague, Czech Republic, September 3-6, 2008, Proceedings, Part II},
    publisher = {Springer},
    series = {Lecture Notes in Computer Science},
    volume = {5163},
    year = {2008},
    note = {http://www.springerlink.com/content/a852001534335865/},
    pdf = {http://www.inb.uni-luebeck.de/publications/pdfs/KlMaMa08.pdf},
    }
    
    

2006

  • Martinetz, T. and Madany Mamlouk, A. and Mota, C.: Fast and Easy Computation of Approximate Smallest Enclosing Balls. Proc. SIBGRAPI, pp. 163-170, 2006
    BibTeX
    @article{MaMaMo06,
    author = {Martinetz, T. and Madany Mamlouk, A. and Mota, C.},
    title = {Fast and {E}asy {C}omputation of {A}pproximate {S}mallest {E}nclosing {B}alls},
    journal = {Proc. SIBGRAPI},
    pages = {163--170},
    year = {2006},
    pdf = {http://www.inb.uni-luebeck.de/publications/pdfs/MaMaMo06.pdf},
    }
    
    

2005

  • Madany Mamlouk, A. and Sharp, H. and Menne, K. M. L. and Hofmann, U. G. and Martinetz, T.: Unsupervised Spike Sorting with ICA and its Evaluation using GENESIS Simulations. Neurocomputing, no. 65-66, pp. 275-282, 2005
    BibTeX
    @article{MaShMeHoMa05,
    author = {Madany Mamlouk, A. and Sharp, H. and Menne, K. M. L. and Hofmann, U. G. and Martinetz, T.},
    title = {Unsupervised {S}pike {S}orting with {ICA} and its {E}valuation using {GENESIS} {S}imulations},
    journal = {Neurocomputing},
    volume = {65--66},
    pages = {275--282},
    year = {2005},
    pdf = {http://www.inb.uni-luebeck.de/publications/pdfs/MaShMeHoMa05.pdf},
    }
    
    

2004

  • Martinetz, T. and Madany Mamlouk, A.: Easy and Fast Computation of Approximate Smallest Enclosing Balls. 2004
    BibTeX
    @techreport{MaMa04a,
    author = {Martinetz, T. and Madany Mamlouk, A.},
    title = {Easy and {F}ast {C}omputation of {A}pproximate {S}mallest {E}nclosing {B}alls},
    institution = {University of L{\"u}beck},
    type = {Technical Report},
    number = {SIIM-TR-A-04-13},
    year = {2004},
    pdf = {http://www.inb.uni-luebeck.de/publications/pdfs/MaMa04a.pdf},
    }
    
    
  • Madany Mamlouk, A. and Martinetz, T.: On the Dimensions of the Olfactory Perception Space. Neurocomputing, no. 58-60, pp. 1019-1025, 2004
    BibTeX
    @article{MaMa04,
    author = {Madany Mamlouk, A. and Martinetz, T.},
    title = {On the {D}imensions of the {O}lfactory {P}erception {S}pace},
    journal = {Neurocomputing},
    volume = {58--60},
    pages = {1019--1025},
    year = {2004},
    pdf = {http://www.inb.uni-luebeck.de/publications/pdfs/MaMa04.pdf},
    }
    
    

2003

  • Madany Mamlouk, A. and Kim, J. T. and Barth, E. and Brauckmann, M. and Martinetz, T.: One-Class Classification with Subgaussians. in Pattern Recognition (DAGM 2003), no. 2781, pp. 346-353, Springer-Verlag Berlin Heidelberg, 2003
    BibTeX
    @inproceedings{MaKiBaBrMa03,
    author = {Madany Mamlouk, A. and Kim, J. T. and Barth, E. and Brauckmann, M. and Martinetz, T.},
    year = {2003},
    title = {{O}ne-{C}lass {C}lassification with {S}ubgaussians},
    editor = {B. Michaelis and G. Krell},
    booktitle = {Pattern Recognition (DAGM 2003)},
    volume = {2781},
    series = {LNCS},
    pages = {346--353},
    publisher = {Springer-Verlag Berlin Heidelberg},
    pdf = {http://www.inb.uni-luebeck.de/publications/pdfs/MaKiBaBrMa03.pdf},
    }
    
    
  • Madany Mamlouk, A. and Chee-Ruiter, C. and Hofmann, U. G. and Bower, J. M.: Quantifying olfactory perception: mapping olfactory perception space by using multidimensional scaling and self-organizing maps. Neurocomputing, no. 52-54, pp. 591-597, 2003
    BibTeX
    @article{MaChHoBo03,
    author = {Madany Mamlouk, A. and Chee-Ruiter, C. and Hofmann, U. G. and Bower, J. M.},
    title = {Quantifying olfactory perception: mapping olfactory perception space by using multidimensional scaling and self-organizing maps},
    journal = {Neurocomputing},
    volume = {52--54},
    pages = {591--597},
    year = {2003},
    pdf = {http://www.inb.uni-luebeck.de/publications/pdfs/MaChHoBo03.pdf},
    }
    
    

2002

  • Madany Mamlouk, A.: Quantifying Olfactory Perception. 2002
    BibTeX
    @mastersthesis{Mada02,
    author = {Madany Mamlouk, A.},
    title = {Quantifying {O}lfactory {P}erception},
    year = {2002},
    pdf = {http://www.inb.uni-luebeck.de/publications/pdfs/Mada02.pdf},
    type = {Diploma Thesis},
    school = {Universit{\"a}t zu L{\"u}beck},
    }
    
    

2000

  • Walthelm, A. and Madany Mamlouk, A.: Multisensoric Active Spatial Environment Exploration and Modeling. in Dynamische Perzeption, Workshop der GI-Fachgruppe 1.0.4 Bildverstehen, Ulm, November 2000, pp. 141-146, AKA Akademische Verlagsgesellschaft, Berlin, 2000
    BibTeX
    @inproceedings{WaMa00,
    author = {Walthelm, A. and Madany Mamlouk, A.},
    title = {Multisensoric {A}ctive {S}patial {E}nvironment {E}xploration and {M}odeling},
    booktitle = {Dynamische Perzeption, Workshop der GI-Fachgruppe 1.0.4 Bildverstehen, Ulm, November 2000},
    publisher = {AKA Akademische Verlagsgesellschaft},
    address = {Berlin},
    pages = {141--146},
    year = {2000},
    }
    
    

1999

  • Walthelm, A. and Kluthe, R. and Madany Mamlouk, A.: Ein 3D-Weltmodell zur teilaktiven Positionsverfolgung in komplexen dynamischen Umgebungen. in 15. Fachgespräch Autonome Mobile Systeme (AMS`99), München, November 26-27, 1999, 1999
    BibTeX
    @inproceedings{WaKlMa99,
    author = {Walthelm, A. and Kluthe, R. and Madany Mamlouk, A.},
    title = {Ein {3D}-{W}eltmodell zur teilaktiven {P}ositionsverfolgung in komplexen dynamischen {U}mgebungen},
    booktitle = {15. Fachgespr{\"a}ch Autonome Mobile Systeme (AMS'99), M{\"u}nchen, November 26-27, 1999},
    year = {1999},
    }