Dr. Jan T. Kim

Publikationen

2006

Daniel Polani, Chrystopher Nehaniv, Thomas Martinetz, and Jan T. Kim,
Relevant {I}nformation in {O}ptimized {P}ersistence vs. {P}rogeny {S}trategies, in Proc. Artificial Life X , L. M.Rocha and M. Bedau and D. Floreano and R. Goldstone and A. Vespignani and L. Yaeger, Eds. 2006.
Datei: PoNeMaKi06.pdf
Bibtex: BibTeX
@inproceedings{PoNeMaKi06,
author = {Daniel Polani and Chrystopher Nehaniv and Thomas Martinetz and Jan T. Kim},
year = {2006},
title = {Relevant {I}nformation in {O}ptimized {P}ersistence vs. {P}rogeny {S}trategies},
editor = {L. M.Rocha and M. Bedau and D. Floreano and R. Goldstone and A. Vespignani and L. Yaeger},
booktitle = {Proc. Artificial Life X},
url = {https://www.inb.uni-luebeck.de/fileadmin/files/publications/inb-publications/pdfs/PoNeMaKi06.pdf}
}

2005

P. Lukowicz, E. Barth, and J. T. Kim,
{O}rganic {A}rchitectures for {L}arge-{S}cale {E}nvironment-{A}ware {S}ensor {N}etworks, in Proceedings of the Workshop on Self-Organization and Emergence 2005 , 2005. pp. 131--139.
Datei: LuBaKi05.pdf
Bibtex: BibTeX
@inproceedings{LuBaKi05,
author = {P. Lukowicz and E. Barth and J. T. Kim},
title = {{O}rganic {A}rchitectures for {L}arge-{S}cale {E}nvironment-{A}ware {S}ensor {N}etworks},
booktitle = {Proceedings of the Workshop on Self-Organization and Emergence 2005},
pages = {131--139},
year = {2005},
url = {https://www.inb.uni-luebeck.de/fileadmin/files/publications/inb-publications/pdfs/LuBaKi05.pdf}
}

2004

J. T. Kim, J. Gewehr, and T. Martinetz,
Binding {M}atrix: {A} {N}ovel {A}pproach for {B}inding {S}ite {R}ecognition, Journal of Bioinformatics and Computational Biology , vol. 2, pp. 289--307, 2004.
Datei: KiGeMa04.pdf
Bibtex: BibTeX
@article{KiGeMa04,
author = { J. T. Kim and J. Gewehr and T. Martinetz},
title = {Binding {M}atrix: {A} {N}ovel {A}pproach for {B}inding {S}ite {R}ecognition},
journal = {Journal of Bioinformatics and Computational Biology},
volume = {2},
pages = {289--307},
year = {2004},
url = {https://www.inb.uni-luebeck.de/fileadmin/files/publications/inb-publications/pdfs/KiGeMa04.pdf}
}

J. T. Kim, T. Martinetz, and D. Polani,
On the {E}volution of {I}nformation in the {C}onstituents of {R}egulatory {G}ene, in Function and Regulation of Cellular Systems. Experiments and Models , A. Deutsch and J. Howard and M. Falcke and W. Zimmermann, Eds. Basel , 2004. pp. 259--264.
Bibtex: BibTeX
@inproceedings{KiMaPo04,
author = {J. T. Kim and T. Martinetz and D. Polani},
title = {On the {E}volution of {I}nformation in the {C}onstituents of {R}egulatory {G}ene},
editor = {A. Deutsch and J. Howard and M. Falcke and W. Zimmermann},
booktitle = {Function and Regulation of Cellular Systems. Experiments and Models},
address = {Basel},
pages = {259--264},
year = {2004}
}

2003

A. Madany Mamlouk, J. T. Kim, E. Barth, M. Brauckmann, and T. Martinetz,
{O}ne-{C}lass {C}lassification with {S}ubgaussians, in Pattern Recognition (DAGM 2003) , B. Michaelis and G. Krell, Eds. Springer-Verlag Berlin Heidelberg, 2003. pp. 346--353.
Datei: MaKiBaBrMa03.pdf
Bibtex: BibTeX
@inproceedings{MaKiBaBrMa03,
author = {Madany Mamlouk, A. and Kim, J. T. and Barth, E. and Brauckmann, M. and Martinetz, T.},
year = {2003},
title = {{O}ne-{C}lass {C}lassification with {S}ubgaussians},
editor = {B. Michaelis and G. Krell},
booktitle = {Pattern Recognition (DAGM 2003)},
volume = {2781},
series = {LNCS},
pages = {346--353},
publisher = {Springer-Verlag Berlin Heidelberg},
url = {https://www.inb.uni-luebeck.de/fileadmin/files/publications/inb-publications/pdfs/MaKiBaBrMa03.pdf}
}

J. T. Kim, T. Martinetz, and D. Polani,
Bioinformatic {P}rinciples {U}nderlying the {I}nformation {C}ontent of {T}ranscription {F}actor {B}inding {S}ites, Journal of Theoretical Biology , vol. 220, pp. 529--544, 2003.
Datei: KiMaPo03.pdf
Bibtex: BibTeX
@article{KiMaPo03,
author = {J. T. Kim and T. Martinetz and D. Polani},
title = {Bioinformatic {P}rinciples {U}nderlying the {I}nformation {C}ontent of {T}ranscription {F}actor {B}inding {S}ites},
journal = {Journal of Theoretical Biology},
volume = {220},
pages = {529--544},
year = {2003},
url = {https://www.inb.uni-luebeck.de/fileadmin/files/publications/inb-publications/pdfs/KiMaPo03.pdf}
}

Jan T. Kim,
Fitness {C}osts of {M}utation {R}ate {A}daption and its {A}pplication to {O}ptimization of {D}ynamic {O}bjective {F}unctions, in Proceedings of the ACIS Fourth International Conference on Software Engineering, Artificial Intelligence, Networking and Parallel/Distributed Computing (SNPD'03) , Walter Dosch and Roger Y. Lee, Eds. Lübeck: Schmidt Römhild, 2003. pp. 68--74.
Datei: Kim03.pdf
Bibtex: BibTeX
@inproceedings{Kim03,
author = {Jan T. Kim}, title = {Fitness {C}osts of {M}utation {R}ate {A}daption and its {A}pplication to {O}ptimization of {D}ynamic {O}bjective {F}unctions},
editor = {Walter Dosch and Roger Y. Lee}, booktitle = {Proceedings of the ACIS Fourth International Conference on Software Engineering, Artificial Intelligence, Networking and Parallel/Distributed Computing (SNPD'03)},
pages = {68--74},
publisher = {Schmidt R{\"o}mhild},
address = {L{\"u}beck},
year = {2003},
url = {https://www.inb.uni-luebeck.de/fileadmin/files/publications/inb-publications/pdfs/Kim03.pdf}
}

T. Martinetz, J. Gewehr, and J. T. Kim,
Statistical {L}earning for {D}etecting {P}rotein-{DNA}-{B}inding {S}ites, in Proceedings of the International Joint Conference on Neural Networks 2003 , D. C. Wunsch II and M. Hasselmo and K. Venayagamoorthy, Eds. IEEE Press, 2003. pp. 2940--2945.
Datei: MaGeKi03.pdf
Bibtex: BibTeX
@inproceedings{MaGeKi03,
author = {T. Martinetz and J. Gewehr and J. T. Kim},
title = {Statistical {L}earning for {D}etecting {P}rotein-{DNA}-{B}inding {S}ites},
booktitle= {Proceedings of the International Joint Conference on Neural Networks 2003},
editor = {D. C. Wunsch II and M. Hasselmo and K. Venayagamoorthy},
publisher = {IEEE Press},
pages = {2940--2945},
year = {2003},
url = {https://www.inb.uni-luebeck.de/fileadmin/files/publications/inb-publications/pdfs/MaGeKi03.pdf}
}

2002

Dirk Repsilber, Jan T. Kim, Hans Liljenström, and Thomas Martinetz,
Using {C}oarse-{G}rained, {D}iscrete {S}ystems for {D}ata-{D}riven {I}nference of {R}egulatory {G}ene {N}etworks: {P}erspectives and {L}imitations for {R}everse {E}ngineering, in Proceedings of the Fifth German Workshop on Artificial Life , Daniel Polani and Jan T. Kim and Thomas Martinetz, Eds. Berlin: infix / Akademische Verlagsgesellschaft Aka, 2002. pp. 67--76.
Datei: ReKiLiMa02.pdf
Bibtex: BibTeX
@inproceedings{ReKiLiMa02,
author = {Dirk Repsilber and Jan T. Kim and Hans Liljenstr{\"o}m and Thomas Martinetz},
title = {Using {C}oarse-{G}rained, {D}iscrete {S}ystems for {D}ata-{D}riven {I}nference of {R}egulatory {G}ene {N}etworks: {P}erspectives and {L}imitations for {R}everse {E}ngineering},
booktitle = {Proceedings of the Fifth German Workshop on Artificial Life},
editor = {Daniel Polani and Jan T. Kim and Thomas Martinetz},
publisher = {infix / Akademische Verlagsgesellschaft Aka},
address = {Berlin},
pages = {67--76},
year = {2002},
url = {https://www.inb.uni-luebeck.de/fileadmin/files/publications/inb-publications/pdfs/ReKiLiMa02.pdf}
}

T. Münster, W. Deleu, L. U. Wingen, M. Ouzunova, J. Cacharr{\'o}n, W. Faigl, S. Werth, J. T. Kim, H. Saedler, and G. Theissen,
Maize {MADS}-{B}ox {G}enes {G}alore, Maydica , vol. 47, pp. 287--301, 2002.
Datei: MuDeWiOuCaFaWeKiSaTh02.pdf
Bibtex: BibTeX
@article{MuDeWiOuCaFaWeKiSaTh02,
author = {T. M{\"u}nster and W. Deleu and L. U. Wingen and M. Ouzunova and J. Cacharr{\'o}n and W. Faigl and S. Werth and J. T. Kim and H. Saedler and G. Theissen},
title = {Maize {MADS}-{B}ox {G}enes {G}alore},
journal = {Maydica},
volume = {47},
pages = {287--301},
year = {2002},
url = {https://www.inb.uni-luebeck.de/fileadmin/files/publications/inb-publications/pdfs/MuDeWiOuCaFaWeKiSaTh02.pdf}
}

D. Polani, J. T. Kim, and T. Martinetz,
Abstracting and {S}ynthesizing the {P}rinciples of {L}iving {S}ystems. {P}roceedings of the {F}ifth {G}erman {W}orkshop on {A}rtificial {L}ife., .... Berlin: infix / Akademische Verlagsgesellschaft Aka, 2002.
Bibtex: BibTeX
@book{PoKiMa02,
author = {D. Polani and J. T. Kim and T. Martinetz},
title = {Abstracting and {S}ynthesizing the {P}rinciples of {L}iving {S}ystems. {P}roceedings of the {F}ifth {G}erman {W}orkshop on {A}rtificial {L}ife},
publisher = {infix / Akademische Verlagsgesellschaft Aka},
address = {Berlin},
year = {2002}
}

2001

Jan T. Kim, Henning Schwöbbermeyer, Günter Theissen, and Heinz Saedler,
{B}iodiversitätsmessung bei {P}flanzen anhand molekularer {D}aten, in Biodiversität. Wissenschaftliche Grundlagen und gesellschaftliche Relevanz. Band 10 der Reihe Wissenschaftsethik und Technologiefolgenbeurteilung , Peter Janich and Mathias Gutmann and Kathrin Priess, Eds. Berlin, Heidelberg: Springer Verlag, 2001. pp. 181--234.
Datei: KiScThSa01.pdf
Bibtex: BibTeX
@inproceedings{KiScThSa01,
author = {Jan T. Kim and Henning Schw{\"o}bbermeyer and G{\"u}nter Theissen and Heinz Saedler},
title = {{B}iodiversit{\"a}tsmessung bei {P}flanzen anhand molekularer {D}aten},
editor = {Peter Janich and Mathias Gutmann and Kathrin Priess},
booktitle = {Biodiversit{\"a}t. Wissenschaftliche Grundlagen und gesellschaftliche Relevanz. Band 10 der Reihe Wissenschaftsethik und Technologiefolgenbeurteilung},
publisher = {Springer Verlag},
address = {Berlin, Heidelberg},
pages = {181--234},
year = {2001},
url = {https://www.inb.uni-luebeck.de/fileadmin/files/publications/inb-publications/pdfs/KiScThSa01.pdf}
}

Luzie U. Wingen, Jan T. Kim, Heinz Saedler, and Koen Dekker,
{ZIGIA-DB}: {A} versatile {D}atabase for {H}andling {C}omplex {F}unctional {G}enomic {D}ata of {A}rabidopsis thaliana, in Proceedings of the German Conference on Bioinformatics 2001. German Research Center for Biotechnology (GBF), Mascheroder Weg 1, 38124 Braunschweig, Germany , Edgar Wingender and Ralf Hofestädt and Ines Liebich, Eds. 2001. pp. 234--235.
Datei: WiKiSaDe01.pdf
Bibtex: BibTeX
@inproceedings{WiKiSaDe01,
author = {Luzie U. Wingen and Jan T. Kim and Heinz Saedler and Koen Dekker},
title = {{ZIGIA-DB}: {A} versatile {D}atabase for {H}andling {C}omplex {F}unctional {G}enomic {D}ata of {A}rabidopsis thaliana},
editor = {Edgar Wingender and Ralf Hofest{\"a}dt and Ines Liebich},
booktitle = {Proceedings of the German Conference on Bioinformatics 2001. German Research Center for Biotechnology (GBF), Mascheroder Weg 1, 38124 Braunschweig, Germany},
pages = {234--235},
year = {2001},
url = {https://www.inb.uni-luebeck.de/fileadmin/files/publications/inb-publications/pdfs/WiKiSaDe01.pdf}
}

D. Polani, T. Martinetz, and J. T. Kim,
An {I}nformation-{T}heoretic {A}pproach for the {Q}uantification of {R}elevance, in Advances in Artificial Life (Proc. 6th European Conference on Artificial Life) , J. Kelemen and P. Sosik, Eds. Springer-Verlag, 2001.
Datei: PoMaKi01a.pdf
Bibtex: BibTeX
@inproceedings{PoMaKi01a,
author = {D. Polani and T. Martinetz and J. T. Kim},
year = {2001},
title = {An {I}nformation-{T}heoretic {A}pproach for the {Q}uantification of {R}elevance},
editor = {J. Kelemen and P. Sosik},
booktitle = {Advances in Artificial Life (Proc. 6th European Conference on Artificial Life)},
series = {LNCS},
publisher = {Springer-Verlag},
url = {https://www.inb.uni-luebeck.de/fileadmin/files/publications/inb-publications/pdfs/PoMaKi01a.pdf}
}

J. T. Kim,
Fitness {C}osts of {M}utation {R}ate {A}daption: {A} {F}actor in {C}oevolution and its {E}ffects in {D}ynamic {F}itness {L}andscapes, in GECCO 2001 - Genetic and Evolutionary Computation Conference: Workshop Program, 8-13, San Francisco, CA, July 2001 , R. Heckendorn, Eds. 2001.
Bibtex: BibTeX
@inproceedings{Kim01a,
author = {J. T. Kim},
title = {Fitness {C}osts of {M}utation {R}ate {A}daption: {A} {F}actor in {C}oevolution and its {E}ffects in {D}ynamic {F}itness {L}andscapes},
editor = {R. Heckendorn},
booktitle = {GECCO 2001 - Genetic and Evolutionary Computation Conference: Workshop Program, 8-13, San Francisco, CA, July 2001},
year = {2001}
}

J. T. Kim,
Modelling the {O}rganization of {F}lower {M}orphogenesis by {T}ranscription {F}actor {N}etworks {U}sing {L}indenmayer {S}ystems, in Proceedings of the German Conference on Bioinformatics 2001 , E. Wingender and R. Hofestädt and I. Liebich, Eds. 2001. pp. 190--191.
Bibtex: BibTeX
@inproceedings{Kim01,
author = {J. T. Kim},
title = {Modelling the {O}rganization of {F}lower {M}orphogenesis by {T}ranscription {F}actor {N}etworks {U}sing {L}indenmayer {S}ystems},
editor = {E. Wingender and R. Hofest{\"a}dt and I. Liebich},
booktitle = {Proceedings of the German Conference on Bioinformatics 2001},
pages = {190--191},
year = {2001}
}

Jan T. Kim, Thomas Martinetz, and Daniel Polani,
On the {E}ffects of {T}ranscription {F}actor {P}roperties on the {I}nformation {C}ontent of {B}inding {S}ites, in Proceedings of the German Conference on Bioinformatics 2001. German Research Center for Biotechnology (GBF), Maschroder Weg 1, 38124 Braunschweig, Germany , Edgar Wingender and Ralf Hofestädt and Ines Liebich, Eds. 2001. pp. 192--194.
Datei: KiMaPo01.pdf
Bibtex: BibTeX
@inproceedings{KiMaPo01,
author = {Jan T. Kim and Thomas Martinetz and Daniel Polani},
title = {On the {E}ffects of {T}ranscription {F}actor {P}roperties on the {I}nformation {C}ontent of {B}inding {S}ites},
editor = {Edgar Wingender and Ralf Hofest{\"a}dt and Ines Liebich},
booktitle = {Proceedings of the German Conference on Bioinformatics 2001. German Research Center for Biotechnology (GBF), Maschroder Weg 1, 38124 Braunschweig, Germany},
pages ={192--194},
year = {2001},
url = {https://www.inb.uni-luebeck.de/fileadmin/files/publications/inb-publications/pdfs/KiMaPo01.pdf}
}

D. Polani, T. Martinetz, and J. T. Kim,
On the {Q}uantification of {R}elevant {I}nformation, 2001.
Datei: PoMaKi01b.ps.gz
Bibtex: BibTeX
@misc{PoMaKi01b,
author = {D. Polani and T. Martinetz and J. T. Kim},
title = {On the {Q}uantification of {R}elevant {I}nformation},
year = {2001},
url = {https://www.inb.uni-luebeck.de/fileadmin/files/publications/inb-publications/pdfs/PoMaKi01b.ps.gz},
note = {Presented at SCAI'01 (Scandinavian Conference on Artificial Intelligence), Feb. 19-21, 2001}
}

2000

J. T. Kim,
{LindEvol}: {A}rtificial {M}odels for {N}atural {P}lant {E}volution, Künstliche Intelligenz , vol. 1, pp. 26--32, 2000.
Datei: Kim00.pdf
Bibtex: BibTeX
@article{Kim00,
author = {J. T. Kim},
title = {{LindEvol}: {A}rtificial {M}odels for {N}atural {P}lant {E}volution}, journal = {K{\"u}nstliche Intelligenz},
volume = {1},
pages = {26--32},
year = {2000},
url = {https://www.inb.uni-luebeck.de/fileadmin/files/publications/inb-publications/pdfs/Kim00.pdf}
}

1999

Henning Schwöbbermeyer, and Jan Kim,
A Comparative Analysis of Biodiversity Measures, in Advances in {A}rtificial {I}ntelligence , Dario Floreano and Jean-Daniel Nicoud and Francesco Mondada, Eds. Berlin, Heidelberg: Springer Verlag, 1999, pp. 119--28.
Datei: ScKi99.pdf
Bibtex: BibTeX
@incollection{ScKi99,
author = {Henning Schw{\"o}bbermeyer and Jan Kim},
title = {A {C}omparative {A}nalysis of {B}iodiversity {M}easures},
editor = {Dario Floreano and Jean-Daniel Nicoud and Francesco Mondada},
booktitle = {Advances in {A}rtificial {I}ntelligence},
address = {Berlin, Heidelberg},
publisher = {Springer Verlag},
series = {Lecture {N}otes in {A}rtificial {I}ntelligence},
pages = {119--28},
year = {1999},
url = {https://www.inb.uni-luebeck.de/fileadmin/files/publications/inb-publications/pdfs/ScKi99.pdf}
}