Publikationen
2013
Krishna Kumar
Kandaswamy,
Ganesan
Pugalenthi,
Kai-Uwe
Kalies,
Enno
Hartmann, and
Thomas
Martinetz,
Ecm{P}red: {P}rediction of extracellular matrix proteins based on random forest with maximum relevance minimum redundancy feature selection, Journal of {T}heoretical {B}iology , vol. 317, pp. 377--383, 2013.
Ecm{P}red: {P}rediction of extracellular matrix proteins based on random forest with maximum relevance minimum redundancy feature selection, Journal of {T}heoretical {B}iology , vol. 317, pp. 377--383, 2013.
Datei: | KaPuKaHaMa13.pdf |
Bibtex: | @article{KaPuKaHaMa13, author = {Krishna Kumar Kandaswamy and Ganesan Pugalenthi and Kai-Uwe Kalies and Enno Hartmann and Thomas Martinetz}, title = {Ecm{P}red: {P}rediction of extracellular matrix proteins based on random forest with maximum relevance minimum redundancy feature selection}, journal = {Journal of {T}heoretical {B}iology}, volume = {317}, pages = {377--383}, year = {2013}, url = {http://www.sciencedirect.com/science/article/pii/S0022519312005486}, url = {https://www.inb.uni-luebeck.de/fileadmin/files/publications/inb-publications/pdfs/KaPuKaHaMa13.pdf} } |
2011
Krishna Kumar
Kandaswamy,
Kuo-Chen
Chou,
Thomas
Martinetz,
Steffen
Möller,
P. N.
Suganthan,
S.
Sridharan, and
Ganesan
Pugalenthi,
{AFP}-{P}red: {A} random forest approach for predicting antifreeze proteins from sequence-derived properties, Journal of Theoretical Biology , vol. 270, no. 1, pp. 56--62, 2011.
{AFP}-{P}red: {A} random forest approach for predicting antifreeze proteins from sequence-derived properties, Journal of Theoretical Biology , vol. 270, no. 1, pp. 56--62, 2011.
Krishna Kumar
Kandaswamy,
Ganesan
Pugalenthi,
Mehrnaz Khodam
Hazrati,
Kai-Uwe
Kalies, and
Thomas
Martinetz,
{BLP}rot: {P}rediction of bioluminescent proteins based on {S}upport {V}ector {M}achine and {R}elief feature selection, BMC Bioinformatics , 2011.
{BLP}rot: {P}rediction of bioluminescent proteins based on {S}upport {V}ector {M}achine and {R}elief feature selection, BMC Bioinformatics , 2011.
Datei: | KrGaMeKaTh11.pdf |
Bibtex: | @article{KrGaMeKaTh11, author = {Krishna Kumar Kandaswamy and Ganesan Pugalenthi and Mehrnaz Khodam Hazrati and Kai-Uwe Kalies and Thomas Martinetz}, title = {{BLP}rot: {P}rediction of bioluminescent proteins based on {S}upport {V}ector {M}achine and {R}elief feature selection}, journal = {BMC Bioinformatics}, year = {2011}, url = {https://www.inb.uni-luebeck.de/fileadmin/files/publications/inb-publications/pdfs/KrGaMeKaTh11.pdf} } |
Ganesan
Pugalenthi,
Krishna Kumar
Kandaswamy, and
Prasanna
Kolatkar,
{RSARF}: {P}rediction of residue solvent accessibility from protein sequence using random forest method, Protein \& Peptide Letters , vol. 18, 2011.
{RSARF}: {P}rediction of residue solvent accessibility from protein sequence using random forest method, Protein \& Peptide Letters , vol. 18, 2011.
Khader
Shameer,
Ganesan
Pugalenthi,
Krishna Kumar
Kandaswamy, and
Ramanathan
Sowdhamini,
3dswap-pred: {P}rediction of {3D} {D}omain {S}wapping from {P}rotein {S}equence {U}sing {R}andom {F}orest {A}pproach, Protein \& Peptide Letters , vol. 18, 2011.
3dswap-pred: {P}rediction of {3D} {D}omain {S}wapping from {P}rotein {S}equence {U}sing {R}andom {F}orest {A}pproach, Protein \& Peptide Letters , vol. 18, 2011.
2010
Ganesan
Pugalenthi,
Krishna Kumar
Kandaswamy,
P. N.
Suganthan,
R.Sowdhamini,
Thomas
Martinetz, and
Prasanna
Kolatkar,
{SMpred}: {A} {S}upport {V}ector {M}achine {A}pproach to {I}dentify {S}tructural {M}otifs in {P}rotein {S}tructure {W}ithout {U}sing {E}volutionary {I}nformation, Journal of Biomolecular Structure and Dynamics , vol. 28, no. 3, 2010.
{SMpred}: {A} {S}upport {V}ector {M}achine {A}pproach to {I}dentify {S}tructural {M}otifs in {P}rotein {S}tructure {W}ithout {U}sing {E}volutionary {I}nformation, Journal of Biomolecular Structure and Dynamics , vol. 28, no. 3, 2010.
Datei: | PuKaSuSoMaKo10.pdf |
Bibtex: | @article{PuKaSuSoMaKo10, author = {Ganesan Pugalenthi and Krishna Kumar Kandaswamy and P. N. Suganthan and R.Sowdhamini and Thomas Martinetz and Prasanna Kolatkar}, title = {{SMpred}: {A} {S}upport {V}ector {M}achine {A}pproach to {I}dentify {S}tructural {M}otifs in {P}rotein {S}tructure {W}ithout {U}sing {E}volutionary {I}nformation}, journal = {Journal of Biomolecular Structure and Dynamics}, volume = {28}, number = {3}, year = {2010}, url = {https://www.inb.uni-luebeck.de/fileadmin/files/publications/inb-publications/pdfs/PuKaSuSoMaKo10.pdf} } |
Krishna Kumar
Kandaswamy,
Ganesan
Pugalenthi,
Enno
Hartmann,
Kai-Uwe
Kalies,
Steffen
Möller,
P.N.
Suganthan, and
Thomas
Martinetz,
{SPRED}: {A} machine learning approach for the identification of classical and non-classical secretory proteins in mammalian genomes, Biochemical and biophysical research communications , vol. 391, no. 3, pp. 1306--1311, 2010.
{SPRED}: {A} machine learning approach for the identification of classical and non-classical secretory proteins in mammalian genomes, Biochemical and biophysical research communications , vol. 391, no. 3, pp. 1306--1311, 2010.
Datei: | KaPuHaKaMoSuMa09.pdf |
Bibtex: | @article{KaPuHaKaMoSuMa10, author = {Krishna Kumar Kandaswamy and Ganesan Pugalenthi and Enno Hartmann and Kai-Uwe Kalies and Steffen M{\"o}ller and P.N. Suganthan and Thomas Martinetz}, title = {{SPRED}: {A} machine learning approach for the identification of classical and non-classical secretory proteins in mammalian genomes}, journal = {Biochemical and biophysical research communications}, volume = {391}, number = {3}, pages = {1306--1311}, year = {2010}, url = {https://www.inb.uni-luebeck.de/fileadmin/files/publications/inb-publications/pdfs/KaPuHaKaMoSuMa09.pdf} } |
Krishna Kumar
Kandaswamy,
Ganesan
Pugalenthi,
P.N
Suganthan, and
Rajeev
Gangal,
{SVMCRYS}: An {SVM} approach for the prediction of protein crystallization propensity from protein, Protein Peptide Letters , vol. 26, pp. 423--430, 2010.
{SVMCRYS}: An {SVM} approach for the prediction of protein crystallization propensity from protein, Protein Peptide Letters , vol. 26, pp. 423--430, 2010.
Khader
Shameer,
Ganesan
Pugalenthi,
Krishna Kumar
Kandaswamy,
Ponnuthurai N.
Suganthan,
Govindaraju
Archunan, and
Ramanathan
Sowdhamini,
Insights in to protein sequence and structure derived features mediating {3D} domain swapping mechanism using {S}upport {V}ector {M}achine based approach, Bioinformatics and Biology Insights , vol. 4, pp. 33--42, 2010.
Insights in to protein sequence and structure derived features mediating {3D} domain swapping mechanism using {S}upport {V}ector {M}achine based approach, Bioinformatics and Biology Insights , vol. 4, pp. 33--42, 2010.
Krishna Kumar
Kandaswamy,
Ganesan
Pugalenthi,
Steffen
Möller,
Enno
Hartmann,
Kai-Uwe
Kalies,
P.N.Suganthan, and
Thomas
Martinetz,
Prediction of apoptosis protein locations with {G}enetic {A}lgorithms and {S}upport {V}ector {M}achines through a new mode of pseudo amino acid composition, Protein Peptide Letters , vol. 17, pp. 1473--1479, 2010.
Prediction of apoptosis protein locations with {G}enetic {A}lgorithms and {S}upport {V}ector {M}achines through a new mode of pseudo amino acid composition, Protein Peptide Letters , vol. 17, pp. 1473--1479, 2010.
2009
K. Krishna
Kumar,
Ganesan
Pugalenthi, and
P.N.
Suganthan,
Identification of {DNA} binding proteins from protein sequence information using random forest method, Journal of Biomolecular Structure and Dynamics , vol. 26, pp. 663--895, 2009.
Identification of {DNA} binding proteins from protein sequence information using random forest method, Journal of Biomolecular Structure and Dynamics , vol. 26, pp. 663--895, 2009.
2008
Ganesan
Pugalenthi,
K. Krishna
Kumar,
P.N.
Suganthan, and
Rajeev
Gangal,
Identification of catalytic residues from protein structure using {S}upport {V}ector {M}achine with sequence and structural features, Biochemical and Biophysical Research Communications , vol. 367, pp. 630--634, 2008.
Identification of catalytic residues from protein structure using {S}upport {V}ector {M}achine with sequence and structural features, Biochemical and Biophysical Research Communications , vol. 367, pp. 630--634, 2008.
2007
Rajeev
Gangal, and
K. Krishna
Kumar,
Reduced {A}lphabet {M}otif {M}ethodology for {GPCR} annotation, Journal of Biomolecular Structure and Dynamics , vol. 25, pp. 299--310, 2007.
Reduced {A}lphabet {M}otif {M}ethodology for {GPCR} annotation, Journal of Biomolecular Structure and Dynamics , vol. 25, pp. 299--310, 2007.
Piyushkumar
Mundra,
Madhan
Kumar,
K. Krishna
Kumar,
Valadi K.
Jayaraman, and
Bhaskar D.
Kulkarni,
Using {P}seudo {A}mino {A}cid {C}omposition to {P}redict {P}rotein {S}ub nuclear {L}ocalization: {A}pproached with {PSSM}, Pattern Recognition Letters , vol. 28, no. 4, pp. 1610--1615, 2007.
Using {P}seudo {A}mino {A}cid {C}omposition to {P}redict {P}rotein {S}ub nuclear {L}ocalization: {A}pproached with {PSSM}, Pattern Recognition Letters , vol. 28, no. 4, pp. 1610--1615, 2007.