Dr. Krishnakumar Kandaswamy

Postdoc

Max-Planck-Institut für Biologie des Alterns
Joseph-Stelzmann-Straße 9b
50931 Köln

Email:
Phone:
+49 221 37970-0
Fax:
+49 221 37970-800

Publikationen

2013

  • Krishna Kumar Kandaswamy and Ganesan Pugalenthi and Kai-Uwe Kalies and Enno Hartmann and Thomas Martinetz: EcmPred: Prediction of extracellular matrix proteins based on random forest with maximum relevance minimum redundancy feature selection. Journal of Theoretical Biology, no. 317, pp. 377-383, 2013
    BibTeX Link
    @article{KaPuKaHaMa13,
    author = {Krishna Kumar Kandaswamy and Ganesan Pugalenthi and Kai-Uwe Kalies and Enno Hartmann and Thomas Martinetz},
    title = {Ecm{P}red: {P}rediction of extracellular matrix proteins based on random forest with maximum relevance minimum redundancy feature selection},
    journal = {Journal of {T}heoretical {B}iology},
    volume = {317},
    pages = {377--383},
    year = {2013},
    url = {http://www.sciencedirect.com/science/article/pii/S0022519312005486},
    pdf = {http://www.inb.uni-luebeck.de/publications/pdfs/KaPuKaHaMa13.pdf},
    }
    
    

2011

  • Khader Shameer and Ganesan Pugalenthi and Krishna Kumar Kandaswamy and Ramanathan Sowdhamini: 3dswap-pred: Prediction of 3D Domain Swapping from Protein Sequence Using Random Forest Approach. Protein & Peptide Letters, no. 18, 2011
    BibTeX
    @article{KhGaKrRa11,
    author = {Khader Shameer and Ganesan Pugalenthi and Krishna Kumar Kandaswamy and Ramanathan Sowdhamini},
    title = {3dswap-pred: {P}rediction of {3D} {D}omain {S}wapping from {P}rotein {S}equence {U}sing {R}andom {F}orest {A}pproach},
    journal = {Protein \& Peptide Letters},
    volume = {18},
    year = {2011},
    }
    
    
  • Krishna Kumar Kandaswamy and Kuo-Chen Chou and Thomas Martinetz and Steffen Möller and P. N. Suganthan and S. Sridharan and Ganesan Pugalenthi: AFP-Pred: A random forest approach for predicting antifreeze proteins from sequence-derived properties. Journal of Theoretical Biology, no. 270, pp. 56-62, 2011
    BibTeX
    @article{KaChMaMoSuSrGa11,
    author = {Krishna Kumar Kandaswamy and Kuo-Chen Chou and Thomas Martinetz and Steffen M{\"o}ller and P. N. Suganthan and S. Sridharan and Ganesan Pugalenthi},
    title = {{AFP}-{P}red: {A} random forest approach for predicting antifreeze proteins from sequence-derived properties},
    journal = {Journal of Theoretical Biology},
    volume = {270},
    number = {1},
    pages = {56--62},
    year = {2011},
    }
    
    
  • Krishna Kumar Kandaswamy and Ganesan Pugalenthi and Mehrnaz Khodam Hazrati and Kai-Uwe Kalies and Thomas Martinetz: BLProt: Prediction of bioluminescent proteins based on Support Vector Machine and Relief feature selection. BMC Bioinformatics, 2011
    BibTeX
    @article{KrGaMeKaTh11,
    author = {Krishna Kumar Kandaswamy and Ganesan Pugalenthi and Mehrnaz Khodam Hazrati and Kai-Uwe Kalies and Thomas Martinetz},
    title = {{BLP}rot: {P}rediction of bioluminescent proteins based on {S}upport {V}ector {M}achine and {R}elief feature selection},
    journal = {BMC Bioinformatics},
    year = {2011},
    pdf = {http://www.inb.uni-luebeck.de/publications/pdfs/KrGaMeKaTh11.pdf},
    }
    
    
  • Ganesan Pugalenthi and Krishna Kumar Kandaswamy and Prasanna Kolatkar: RSARF: Prediction of residue solvent accessibility from protein sequence using random forest method. Protein & Peptide Letters, no. 18, 2011
    BibTeX
    @article{GaKrPr11,
    author = {Ganesan Pugalenthi and Krishna Kumar Kandaswamy and Prasanna Kolatkar},
    title = {{RSARF}: {P}rediction of residue solvent accessibility from protein sequence using random forest method},
    journal = {Protein \& Peptide Letters},
    note = {(to appear)},
    volume = {18},
    year = {2011},
    }
    
    

2010

  • Ganesan Pugalenthi and Kandaswamy Krishna Kumar and P.N. Suganthan and G.Archunan and R.Sowdhamini: Identification of functionally diverse lipocalin proteins from sequence information using support vector machine. Amino Acids, no. 39, pp. 777-783, 2010
    BibTeX
    @article{GaKaSuArSo10,
    author = {Ganesan Pugalenthi and Kandaswamy Krishna Kumar and P.N. Suganthan and G.Archunan and R.Sowdhamini},
    title = {Identification of functionally diverse lipocalin proteins from sequence information using support vector machine},
    journal = {Amino Acids},
    volume = {39},
    pages = {777--783},
    year = {2010},
    }
    
    
  • Khader Shameer and Ganesan Pugalenthi and Krishna Kumar Kandaswamy and Ponnuthurai N. Suganthan and Govindaraju Archunan and Ramanathan Sowdhamini: Insights in to protein sequence and structure derived features mediating 3D domain swapping mechanism using Support Vector Machine based approach. Bioinformatics and Biology Insights, no. 4, pp. 33-42, 2010
    BibTeX
    @article{KhGaKrPoGoRa10,
    author = {Khader Shameer and Ganesan Pugalenthi and Krishna Kumar Kandaswamy and Ponnuthurai N. Suganthan and Govindaraju Archunan and Ramanathan Sowdhamini},
    title = {Insights in to protein sequence and structure derived features mediating {3D} domain swapping mechanism using {S}upport {V}ector {M}achine based approach},
    journal = {Bioinformatics and Biology Insights},
    volume = {4},
    pages = {33--42},
    year = {2010},
    }
    
    
  • Krishna Kumar Kandaswamy and Ganesan Pugalenthi and Steffen Möller and Enno Hartmann and Kai-Uwe Kalies and P.N.Suganthan and Thomas Martinetz: Prediction of apoptosis protein locations with Genetic Algorithms and Support Vector Machines through a new mode of pseudo amino acid composition. Protein Peptide Letters, no. 17, pp. 1473-1479, 2010
    BibTeX
    @article{KaPuMoHaKaSuMa10,
    author = {Krishna Kumar Kandaswamy and Ganesan Pugalenthi and Steffen M{\"o}ller and Enno Hartmann and Kai-Uwe Kalies and P.N.Suganthan and Thomas Martinetz},
    title = {Prediction of apoptosis protein locations with {G}enetic {A}lgorithms and {S}upport {V}ector {M}achines through a new mode of pseudo amino acid composition},
    journal = {Protein Peptide Letters},
    pages = {1473--1479},
    volume = {17},
    year = {2010},
    }
    
    
  • Ganesan Pugalenthi and Krishna Kumar Kandaswamy and P. N. Suganthan and R.Sowdhamini and Thomas Martinetz and Prasanna Kolatkar: SMpred: A Support Vector Machine Approach to Identify Structural Motifs in Protein Structure Without Using Evolutionary Information. Journal of Biomolecular Structure and Dynamics, no. 28, 2010
    BibTeX
    @article{PuKaSuSoMaKo10,
    author = {Ganesan Pugalenthi and Krishna Kumar Kandaswamy and P. N. Suganthan and R.Sowdhamini and Thomas Martinetz and Prasanna Kolatkar},
    title = {{SMpred}: {A} {S}upport {V}ector {M}achine {A}pproach to {I}dentify {S}tructural {M}otifs in {P}rotein {S}tructure {W}ithout {U}sing {E}volutionary {I}nformation},
    journal = {Journal of Biomolecular Structure and Dynamics},
    volume = {28},
    number = {3},
    year = {2010},
    pdf = {http://www.inb.uni-luebeck.de/publications/pdfs/PuKaSuSoMaKo10.pdf},
    }
    
    
  • Krishna Kumar Kandaswamy and Ganesan Pugalenthi and Enno Hartmann and Kai-Uwe Kalies and Steffen Möller and P.N. Suganthan and Thomas Martinetz: SPRED: A machine learning approach for the identification of classical and non-classical secretory proteins in mammalian genomes. Biochemical and biophysical research communications, no. 391, pp. 1306-1311, 2010
    BibTeX
    @article{KaPuHaKaMoSuMa10,
    author = {Krishna Kumar Kandaswamy and Ganesan Pugalenthi and Enno Hartmann and Kai-Uwe Kalies and Steffen M{\"o}ller and P.N. Suganthan and Thomas Martinetz},
    title = {{SPRED}: {A} machine learning approach for the identification of classical and non-classical secretory proteins in mammalian genomes},
    journal = {Biochemical and biophysical research communications},
    volume = {391},
    number = {3},
    pages = {1306--1311},
    year = {2010},
    pdf = {http://www.inb.uni-luebeck.de/publications/pdfs/KaPuHaKaMoSuMa09.pdf},
    }
    
    
  • Krishna Kumar Kandaswamy and Ganesan Pugalenthi and P.N Suganthan and Rajeev Gangal: SVMCRYS: An SVM approach for the prediction of protein crystallization propensity from protein. Protein Peptide Letters, no. 26, pp. 423-430, 2010
    BibTeX
    @article{KrGaSuRa10,
    author = {Krishna Kumar Kandaswamy and Ganesan Pugalenthi and P.N Suganthan and Rajeev Gangal},
    title = {{SVMCRYS}: An {SVM} approach for the prediction of protein crystallization propensity from protein},
    journal = {Protein Peptide Letters},
    volume = {26},
    pages = {423--430},
    year = {2010},
    }
    
    

2008

  • Kandaswamy Krishna Kumar and Prakash Shrikrishna Shelokar: An SVM method using evolutionary information for the identification of allergenic proteins. Bioinformation, no. 2, pp. 253-256, 2008
    BibTeX
    @article{KaPr08,
    author = {Kandaswamy Krishna Kumar and Prakash Shrikrishna Shelokar},
    title = {An {SVM} method using evolutionary information for the identification of allergenic proteins},
    journal = {Bioinformation},
    volume = {2},
    pages = {253--256},
    year = {2008},
    }