Kandaswamy.bib

@article{GaKaSuArSo10,
  author = {Ganesan Pugalenthi and Kandaswamy Krishna Kumar and P.N. Suganthan and G.Archunan and R.Sowdhamini},
  title = {Identification of functionally diverse lipocalin proteins from sequence information using support vector machine},
  journal = {Amino Acids},
  volume = 39,
  pages = {777--783},
  year = 2010,
  optinb_www = 1
}

@article{GaKrPr11,
  author = {Ganesan Pugalenthi and Krishna Kumar Kandaswamy and Prasanna Kolatkar},
  title = {{RSARF}: {P}rediction of residue solvent accessibility from protein sequence using random forest method},
  journal = {Protein \& Peptide Letters},
  note = {(to appear)},
  volume = 18,
  year = {2011},
  optinb_www = 1
}

@article{GaKrSuRa08,
  author = {Ganesan Pugalenthi and K. Krishna Kumar and P.N. Suganthan and Rajeev Gangal},
  title = {Identification of catalytic residues from protein structure using {S}upport {V}ector {M}achine with sequence and structural features},
  journal = {Biochemical and Biophysical Research Communications},
  volume = 367,
  pages = {630--634},
  year = 2008,
  optinb_www = 1
}

@article{KaChMaMoSuSrGa10,
  author = {Krishna Kumar Kandaswamy and Kuo-Chen Chou and Thomas Martinetz and Steffen M{\"o}ller and Ponnuthurai Nagaratnam Suganthan and S. Sridharan and Pugalenthi Ganesan},
  title = {{AFP}-{P}red: {A} random forest approach for predicting antifreeze proteins from sequence-derived properties},
  journal = {Journal of Theoretical Biology},
  pages = {56--62},
  volume = 270,
  year = {2011},
  optinb_www = 1
}

@article{KaPr08,
  author = {Kandaswamy Krishna Kumar and Prakash Shrikrishna Shelokar},
  title = {An {SVM} method using evolutionary information for the identification of allergenic proteins},
  journal = {Bioinformation},
  volume = 2,
  pages = {253--256},
  year = 2008,
  optinb_www = 1
}

@article{KaPuHaKaMoSuMa09,
  author = {Krishna Kumar Kandaswamy and Ganesan Pugalenthi and Enno Hartmann and Kai-Uwe Kalies and Steffen M{\"o}ller and P.N. Suganthan and Thomas Martinetz},
  title = {{SPRED}: {A} machine learning approach for the identification of classical and non-classical secretory proteins in mammalian genomes},
  journal = {Biochemical and Biophysical Research Communications},
  pages = {1306--1311},
  volume = 391,
  year = 2010,
  pdf = {http://www.inb.uni-luebeck.de/publications/pdfs/KaPuHaKaMoSuMa09.pdf},
  optinb_www = 1
}

@article{KaPuMoHaKaSuMa10,
  author = {Krishna Kumar Kandaswamy and Ganesan Pugalenthi and Steffen M{\"o}ller and Enno Hartmann and Kai-Uwe Kalies and P.N.Suganthan and Thomas Martinetz},
  title = {Prediction of apoptosis protein locations with {G}enetic {A}lgorithms and {S}upport {V}ector {M}achines through a new mode of pseudo amino acid composition},
  journal = {Protein Peptide Letters},
  pages = {1473--1479},
  volume = 17,
  year = 2010,
  optinb_www = 1
}

@article{KhGaKrPoGoRa10,
  author = {Khader Shameer and Ganesan Pugalenthi and Krishna Kumar Kandaswamy and Ponnuthurai N. Suganthan and Govindaraju Archunan and Ramanathan Sowdhamini},
  title = {Insights in to protein sequence and structure derived features mediating {3D} domain swapping mechanism using {S}upport {V}ector {M}achine based approach},
  journal = {Bioinformatics and Biology Insights},
  volume = 4,
  pages = {33--42},
  year = 2010,
  optinb_www = 1
}

@article{KhGaKrRa11,
  author = {Khader Shameer and Ganesan Pugalenthi and Krishna Kumar Kandaswamy and Ramanathan Sowdhamini},
  title = {3dswap-pred: {P}rediction of {3D} {D}omain {S}wapping from {P}rotein {S}equence {U}sing {R}andom {F}orest {A}pproach},
  journal = {Protein \& Peptide Letters},
  volume = 18,
  year = {2011},
  optinb_www = 1
}

@article{KrGaMeKaTh11,
  author = {Krishna Kumar Kandaswamy and Ganesan Pugalenthi and Mehrnaz Khodam Hazrati and Kai-Uwe Kalies and Thomas Martinetz},
  title = {{BLP}rot: {P}rediction of bioluminescent proteins based on {S}upport {V}ector {M}achine and {R}elief feature selection},
  journal = {BMC Bioinformatics},
  year = {2011},
  pdf = {http://www.inb.uni-luebeck.de/publications/pdfs/KrGaMeKaTh11.pdf},
  optinb_www = 1
}

@article{KrGaSu09,
  author = {K. Krishna Kumar and Ganesan Pugalenthi, ndP.N. Suganthan},
  title = {Identification of {DNA} binding proteins from protein sequence information using random forest method},
  journal = {Journal of Biomolecular Structure and Dynamics},
  volume = 26,
  pages = {663--895},
  year = 2009,
  optinb_www = 1
}

@article{KrGaSuRa10,
  author = {Krishna Kumar Kandaswamy and Ganesan Pugalenthi and P.N Suganthan and Rajeev Gangal},
  title = {{SVMCRYS}: An {SVM} approach for the prediction of protein crystallization propensity from protein},
  journal = {Protein Peptide Letters},
  volume = 26,
  pages = {423--430},
  year = 2010,
  optinb_www = 1
}

@article{PiMaKrVaBh07,
  author = {Piyushkumar Mundra and Madhan Kumar and K. Krishna Kumar and Valadi K. Jayaraman and Bhaskar D. Kulkarni},
  title = {Using {P}seudo {A}mino {A}cid {C}omposition to {P}redict {P}rotein {S}ub nuclear {L}ocalization: {A}pproached with {PSSM}},
  journal = {Pattern Recognition Letters},
  volume = 28,
  pages = {1610--1615},
  year = 2007,
  optinb_www = 1
}

@article{PuKaSuSoMaKo10,
  author = {Ganesan Pugalenthi and Krishna Kumar Kandaswamy and P. N. Suganthan and R.Sowdhamini and Thomas Martinetz and Prasanna Kolatkar},
  title = {A support vector machine approach to identify structural motifs in protein structure without using evolutionary information},
  journal = {Journal of Biomolecular Structure and Dynamics},
  volume = 28,
  year = 2010,
  pdf = {http://www.inb.uni-luebeck.de/publications/pdfs/PuKaSuSoMaKo10.pdf},
  optinb_www = 1
}

@article{RaKr07,
  author = {Rajeev Gangal and K. Krishna Kumar},
  title = {Reduced {A}lphabet {M}otif {M}ethodology for {GPCR} annotation},
  journal = {Journal of Biomolecular Structure and Dynamics},
  volume = 25,
  pages = {299--310},
  year = 2007,
  optinb_www = 1
}

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